Import DADA2 ASV Tables into phyloseq

ASV Tables Created in R

ASV tables created using the Bioconductor/R version of DADA2 are matrix files with samples as rows and taxa as columns. The taxa names are the sequences themselves. Because these matrices can be quite large they are most conveniently saved as compressed rds files. Read these files into R and create an experiment level phyloseq object containing an OTU or ASV table and representative sequences with the following R script: Continue reading “Import DADA2 ASV Tables into phyloseq”